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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44059049_44059090_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44059049 - 44059090
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTACTTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTAATATGAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
EDPAIAQLLKNLGLCMSLQ*
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.19
1.4
64.9
44
Major BPS
100
1.24
0.5
100
0
Major PPT
46.9
-0.1
1.8
50.6
46.7
Minor 5ss
38
-1.3
3.9
54.3
37
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
PIK3R4
Ensembl Gene ID:
ENSAPLG00000010416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010882
44059021 - 44071573
12553