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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44059282_44060927_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44059282 - 44060927
Intron Length:
1646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAATT
Flanking Amino Acid:
NPFITQPIIQIDKEIVLLSV
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.3
0.71
0.9
74.9
38.8
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
66.8
0.61
1.3
79.72
37

Associated Gene:

Gene:
PIK3R4
Ensembl Gene ID:
ENSAPLG00000010416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010882
44059021 - 44071573
12553