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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44064293_44066206_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44064293 - 44066206
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TTCGCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACCA
Flanking Amino Acid:
TSQPSDNYDTELQALHEMVQ
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.5
0.73
0.8
76.7
31.9
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
57.5
0.23
1.8
72
40

Associated Gene:

Gene:
PIK3R4
Ensembl Gene ID:
ENSAPLG00000010416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010882
44059021 - 44071573
12553