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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44066342_44068640_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44066342 - 44068640
Intron Length:
2299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CAATTCTTAACC
Flanking Amino Acid:
EATIVRLAYAENIALLAETA
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
73.2
0.71
1.2
72.05
38.8

Associated Gene:

Gene:
PIK3R4
Ensembl Gene ID:
ENSAPLG00000010416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010882
44059021 - 44071573
12553