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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44069224_44069390_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44069224 - 44069390
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TTCTCTCCCACT
Flanking Amino Acid:
KIEDRSIRELVTQMVHREPD
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
50
0
1.2
61.8
35.9
Major PPT
69.4
0.44
1
67.5
38.2
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
46.7
-0.1
2.2
72.5
44.6

Associated Gene:

Gene:
PIK3R4
Ensembl Gene ID:
ENSAPLG00000010416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010882
44059021 - 44071573
12553