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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44069525_44070843_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44069525 - 44070843
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGAT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATATCTTTGACT
Flanking Amino Acid:
LKRAMDIFSAGCVIAELFTE
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
40.5
-1.1
3.2
57.9
46.8
Minor BPS
77.7
0.95
1
86.12
33.3

Associated Gene:

Gene:
PIK3R4
Ensembl Gene ID:
ENSAPLG00000010416
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010882
44059021 - 44071573
12553