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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44146909_44147276_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44146909 - 44147276
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTTACGCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATGTAACT
Flanking Amino Acid:
LSKLVPPECHCVREGRVEHT
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73.1
37.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.2
0.61
0.9
69.5
36.8
Minor 5ss
40.2
-1.1
3.2
53.5
45
Minor BPS
56.7
0.29
2.2
80.33
41.9

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800