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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44147386_44150388_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44147386 - 44150388
Intron Length:
3003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATACC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGCTTTTTACCT
Flanking Amino Acid:
RVPADLRLFEAADLSIDESS
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.9
34.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.3
0.59
1
78.1
34.2
Minor 5ss
42.4
-0.8
2.6
55.1
42.2
Minor BPS
61.4
0.44
1.6
75.46
41.9

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874