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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44153668_44154534_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44153668 - 44154534
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTGTATTTATTT
Flanking Amino Acid:
HILDMFTIGVSLAVAAIPEG
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
51.7
0.13
1.8
69.25
42.2

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874
ENSAPLT00000035723
44136785 - 44173584
36800