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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44157581_44157688_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44157581 - 44157688
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCGTCCTCATCT
Flanking Amino Acid:
NNPSISRIVEAGCVCNDAVI
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.9
0.58
0.8
73.1
31.4
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
52.1
0.15
1.9
67.69
48.8

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874