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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44159248_44160883_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44159248 - 44160883
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
GTATGTATACAT
Flanking Amino Acid:
AVKCVHRAQQDKPEVCFMKG
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.6
35.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
47.8
-0.2
2.9
67.4
44
Minor BPS
41
-0.6
2.2
59.64
43.4

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874