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Intron Name: Anas_platyrhynchos_platyrhynchos_2_44161041_44162941_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44161041 - 44162941

Intron Length:

1901

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCTTAAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTCTCTTAAAA

Flanking Amino Acid:

KTSMGSAGLRVLALASGPEL

Intron Amino Acid Position:

531

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.5

40.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

66.3

0.37

1.1

36.7

Minor 5ss

37.5

-1.4

3.3

49.3

46.4

Minor BPS

68.8

0.58

1.4

74.98

35.6

Associated Gene:

Gene:

ATP2C1

Ensembl Gene ID:

ENSAPLG00000010766

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004952

44138733 - 44173584

34852

ENSAPLT00000035723

44136785 - 44173584

36800

ENSAPLT00000032170

44136785 - 44172542

35758

ENSAPLT00000011254

44135711 - 44173584

37874