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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44163113_44164185_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44163113 - 44164185
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAACA
5'SS Class:
major
3'SS Sequence:
TATCTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTGTTATCT
Flanking Amino Acid:
GDSQETAVAIASRLGLYSKN
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.8
35.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.6
0.73
0.9
73.9
40.3
Minor 5ss
40
-1.1
2.8
46.9
42.6
Minor BPS
60.6
0.41
2.3
87.15
38.9

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800