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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44164284_44165927_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44164284 - 44165927
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
GTGCTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTGCTTTTAACA
Flanking Amino Acid:
IQQLSQITPKVAVFYRASPR
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.7
0.53
1
69.2
40.7
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
66.1
0.5
1.2
68.93
37.4

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011254
44135711 - 44173584
37874
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758