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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44165979_44166749_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44165979 - 44166749
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ACTGTCTAAATT
Flanking Amino Acid:
SPRHKLKIIKSLQNNGAVVA
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.2
0.79
0.6
84.8
22.9
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
53.5
0.19
1.8
68.91
43

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874