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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44170004_44170662_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44170004 - 44170662
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTGTTTCAATT
Flanking Amino Acid:
NIIMDGPPAQSLGVEPVDKD
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.1
0.52
1.1
76.3
36.7
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
55
0.23
1.6
71.95
39.8

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758
ENSAPLT00000011254
44135711 - 44173584
37874
ENSAPLT00000004952
44138733 - 44173584
34852