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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44170811_44171443_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44170811 - 44171443
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
ACACTCTTATTT
Flanking Amino Acid:
CGTLFVFWRELRDNVITPRD
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
79.8
0.67
1
77.3
37
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
51.7
0.13
1.6
64.07
40.7

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011254
44135711 - 44173584
37874
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000032170
44136785 - 44172542
35758