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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44172508_44173447_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44172508 - 44173447
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAACTTTTAAAA
Flanking Amino Acid:
VFQTESLSILDLLFLLGLTS
Intron Amino Acid Position:
884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.8
74.2
36.3
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
51.5
0.04
1.4
55.68
36.8

Associated Gene:

Gene:
ATP2C1
Ensembl Gene ID:
ENSAPLG00000010766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004952
44138733 - 44173584
34852
ENSAPLT00000035723
44136785 - 44173584
36800
ENSAPLT00000011254
44135711 - 44173584
37874