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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44176996_44179614_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44176996 - 44179614
Intron Length:
2619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTCCCAT
5'SS Class:
weak_major
3'SS Sequence:
ACATTTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TAATAACTAACA
Flanking Amino Acid:
KKASKKRKAISAELLLTVLP
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.2
57.5
43
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
78.8
0.65
0.9
69.9
40.7
Minor 5ss
45.7
-0.5
2.9
64.4
47
Minor BPS
48.2
-0.1
2.1
65.34
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004618
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004745
44176908 - 44181358
4451