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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44179837_44180041_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44179837 - 44180041
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTTTGAACA
Flanking Amino Acid:
STPLSEPDLSRLYSGTLVHS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.9
0.56
1
72.5
36.4
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
60.1
0.31
1.4
69
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004618
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004745
44176908 - 44181358
4451