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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44352340_44359446_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44352340 - 44359446
Intron Length:
7107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
GTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
GCTGACTAACCT
Flanking Amino Acid:
PGQFVDVTAKTIGKGFQGVM
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.3
66.7
40.1
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
82.5
0.73
0.7
81
31.1
Minor 5ss
41.5
-0.9
3
52.3
38.1
Minor BPS
43.9
-0.3
2.1
61
48.3

Associated Gene:

Gene:
MRPL3
Ensembl Gene ID:
ENSAPLG00000011128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011607
44340933 - 44367936
27004