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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44359508_44360745_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44359508 - 44360745
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCTTT
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTATTTATAT
Flanking Amino Acid:
NVTDDAIIKPGTPLYAAHFR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.6
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
48.5
-0.1
3.2
73.2
43.6
Minor BPS
49.3
0.02
1.8
68.39
42.4

Associated Gene:

Gene:
MRPL3
Ensembl Gene ID:
ENSAPLG00000011128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011607
44340933 - 44367936
27004