About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44366842_44367838_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44366842 - 44367838
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTTGGGGCA
5'SS Class:
weak_major
3'SS Sequence:
CCTCACTGGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
TTTCCCCTCACT
Flanking Amino Acid:
LGRGRAAWGGRGQLGPVARH
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.18
1.3
50
40.8
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
49.7
-0
1.2
50.8
36.9
Minor 5ss
25
-2.9
3.4
31.5
42.5
Minor BPS
61.1
0.43
2.1
86.59
38.8

Associated Gene:

Gene:
MRPL3
Ensembl Gene ID:
ENSAPLG00000011128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011607
44340933 - 44367936
27004