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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44411313_44414865_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44411313 - 44414865
Intron Length:
3553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TCTTCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
IMGGCQIQFTVAIDFTASNG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
61.1
0.28
1
67
29.8
Major PPT
85.5
0.8
0.8
77.6
35.4
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011297
44411175 - 44460634
49460