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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44414926_44415545_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44414926 - 44415545
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
TTCTTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTAATTTACAT
Flanking Amino Acid:
SGIVILNQCKIHKMHSFLDY
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
47.5
-0.1
1.9
67.86
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011297
44411175 - 44460634
49460