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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44415633_44423308_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44415633 - 44423308
Intron Length:
7676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
TTTTCCTTCATG
Flanking Amino Acid:
EMRGAMEGRQVQWECINPKY
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
90.7
0.91
0.6
86.9
23.9
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
72.6
0.57
1.8
79.08
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011297
44411175 - 44460634
49460