About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44423408_44459576_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44423408 - 44459576
Intron Length:
36169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GTGCTCTTATGT
Flanking Amino Acid:
CSGDQDRRLKCIVWDWDSNG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
69.9
41.1
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
29.2
-2.4
2.7
35.6
40.5
Minor BPS
48.4
-0
1.9
65.5
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011297
44411175 - 44460634
49460