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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44459667_44460577_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44459667 - 44460577
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTCCCTTCATT
Flanking Amino Acid:
ATQQLVHRTEVVMNNLNPAW
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
66.2
0.59
1.7
82.31
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011297
44411175 - 44460634
49460