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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44675636_44676225_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44675636 - 44676225
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATC
Flanking Amino Acid:
FLSVVYKQNEIYVQSTDCDQ
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
100
1.24
0.5
100
0
Major PPT
84.6
0.78
0.7
81.8
29.8
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
56.6
0.19
1.7
70.66
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006213
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039175
44671707 - 44678705
6999
ENSAPLT00000006430
44669536 - 44685194
15659