About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44678691_44680282_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44678691 - 44680282
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TTTTTTGTATTC
Flanking Amino Acid:
DFQRQFKQYRTFLKFLASHT
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
75.6
36.7
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
86.1
0.81
0.8
78.1
40.1
Minor 5ss
38
-1.4
3.4
47.1
48.3
Minor BPS
48.9
-0.1
2.2
68.82
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006213
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006430
44669536 - 44685194
15659