About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44680379_44682075_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44680379 - 44682075
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TCTTTCTTCACT
Flanking Amino Acid:
WKLSDILQYEDINNYTLPVW
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
79.3
0.66
0.8
74.9
28.8
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
72
0.77
1.7
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006213
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006430
44669536 - 44685194
15659