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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44683505_44684430_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44683505 - 44684430
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGACCTTTAACT
Flanking Amino Acid:
HQQKMVMYSAHAATIVALQM
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
71.8
39.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86
0.81
0.8
80
30.8
Minor 5ss
31.9
-2.1
2.9
43.6
43.3
Minor BPS
70.9
0.74
1.2
77.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006213
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006430
44669536 - 44685194
15659