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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44698127_44699563_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44698127 - 44699563
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTAA
5'SS Class:
major
3'SS Sequence:
ACTTGCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AATCTCATAGCC
Flanking Amino Acid:
WPQGFGQLTQTGMQQLYELG
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73.7
33
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72.7
0.51
0.9
65.1
35.7
Minor 5ss
37.8
-1.4
3.1
49.1
47.1
Minor BPS
48
-0.1
1.8
60.65
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006016
44693583 - 44711219
17637