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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44699651_44700497_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44699651 - 44700497
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATAGC
5'SS Class:
major
3'SS Sequence:
ATTCTATCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TGTTTGTTAACT
Flanking Amino Acid:
FLNSTYNRKEFYIQSTDYDR
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
71.2
38.9
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
81.7
0.71
0.8
78.6
34.3
Minor 5ss
41.5
-0.9
2.7
54.4
42.8
Minor BPS
69.1
0.68
2
88.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006016
44693583 - 44711219
17637