About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44700651_44706196_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44700651 - 44706196
Intron Length:
5546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTTCCTTTATC
Flanking Amino Acid:
VHIVPKATDRGIHNYSLPVW
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
69.8
0.45
0.9
63.6
37.1
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
78.4
0.88
1.5
86.75
30.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006016
44693583 - 44711219
17637