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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44706330_44707723_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44706330 - 44707723
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCCCATCT
Flanking Amino Acid:
KTEEKSRLQGGVLVNIILNS
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
1
83
31.7
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
56.5
0.28
2.1
85.43
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006016
44693583 - 44711219
17637