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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44707807_44709605_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44707807 - 44709605
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCCCCCAATA
Flanking Amino Acid:
KERKMEVYSAHDTTIGALQI
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.4
0.48
0.8
67.3
27.9
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
56.7
0.21
1.9
74.38
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006016
44693583 - 44711219
17637