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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44755871_44755963_F

Intron Information:

Intron Rank:
24923
Intron Class:
major
Intron Phase:
Intron Coordinates:
44755871 - 44755963
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.7
0.49
1.1
75.6
37.7
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
63.7
0.43
1.7
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412