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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44756171_44756221_F

Intron Information:

Intron Rank:
24925
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
44756171 - 44756221
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAGAAAAA
5'SS Class:
weak_major
3'SS Sequence:
CTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TCATCCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.1
54.9
38.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.3
0.79
0.6
84.4
23.6
Minor 5ss
32
-2.1
3.3
35.3
42.4
Minor BPS
73.1
0.8
1.6
84.67
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412