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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44759473_44760353_F

Intron Information:

Intron Rank:
24932
Intron Class:
major
Intron Phase:
Intron Coordinates:
44759473 - 44760353
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTTGTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
81.1
0.7
0.8
76.8
31.9
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
61.6
0.44
2.2
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412