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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44760411_44761733_F

Intron Information:

Intron Rank:
24933
Intron Class:
major
Intron Phase:
Intron Coordinates:
44760411 - 44761733
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCTCTAGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
65.8
0.36
1
66.2
33.6
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
45.9
-0.3
2.2
60.09
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412