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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44764470_44766365_F

Intron Information:

Intron Rank:
24937
Intron Class:
major
Intron Phase:
Intron Coordinates:
44764470 - 44766365
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTCTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.5
0.87
0.7
83.9
31.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
70.9
0.73
1.6
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412