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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44771755_44771890_F

Intron Information:

Intron Rank:
24943
Intron Class:
major
Intron Phase:
Intron Coordinates:
44771755 - 44771890
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGTG
5'SS Class:
major
3'SS Sequence:
TATCAACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AATCCTATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.2
38.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
69.7
0.44
0.9
59.8
41.2
Minor 5ss
41.7
-0.9
3.2
57.3
47.4
Minor BPS
53.4
0.19
1.7
71.93
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412