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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44771996_44772710_F

Intron Information:

Intron Rank:
24944
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
44771996 - 44772710
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTGTC
5'SS Class:
major
3'SS Sequence:
AATTCTGAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TAATTCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.7
40.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
57
0.16
1.1
52.3
41
Minor 5ss
41.7
-0.9
3.4
61.2
43.7
Minor BPS
62.1
0.46
1.5
76.51
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412