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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44772914_44773342_F

Intron Information:

Intron Rank:
24945
Intron Class:
major
Intron Phase:
Intron Coordinates:
44772914 - 44773342
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGCTCCTGTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
57.4
0.22
1.9
68.55
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412