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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44773428_44773598_F

Intron Information:

Intron Rank:
24946
Intron Class:
major
Intron Phase:
Intron Coordinates:
44773428 - 44773598
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412