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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44774369_44774582_F

Intron Information:

Intron Rank:
24948
Intron Class:
major
Intron Phase:
Intron Coordinates:
44774369 - 44774582
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TTAACTTTGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.9
33.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
83.4
0.75
0.6
80.2
25.4
Minor 5ss
31.4
-2.1
2.7
33.6
35.4
Minor BPS
56.7
0.2
1.7
67.58
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412