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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44777316_44777882_F

Intron Information:

Intron Rank:
24952
Intron Class:
major
Intron Phase:
Intron Coordinates:
44777316 - 44777882
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TCTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.6
0.89
0.7
84.8
28.7
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412