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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44782144_44782719_F

Intron Information:

Intron Rank:
24958
Intron Class:
major
Intron Phase:
Intron Coordinates:
44782144 - 44782719
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAGAT
U12 Branch Point Sequence:
ATCACGTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
66.8
0.42
1.1
64.4
41.8
Major PPT
79.3
0.66
0.8
72.8
37.5
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
46.4
-0.1
2.3
66.48
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412