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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44783289_44783828_F

Intron Information:

Intron Rank:
24960
Intron Class:
major
Intron Phase:
Intron Coordinates:
44783289 - 44783828
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATCTCTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
66.4
0.37
1
66.5
33
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
53.6
-0
1.7
59.22
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004777
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005052
44747627 - 44794038
46412